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2009
Cannon, J. T., Rychel A. L., Eccleston H., Halanych K. M., & Swalla B. J. (2009).  Molecular phylogeny of hemichordata, with updated status of deep-sea enteropneusts. Molecular Phylogenetics and Evolution. 52, 17-24.
2008
Swalla, B. J., & Smith A. B. (2008).  Deciphering deuterostome phylogeny: molecular, morphological and palaeontological perspectives. Philosophical Transitions of the Royal Society B. 363, 1557-1568.
2000
Cameron, C. B., Garey J. R., & Swalla B. J. (2000).  Evolution of the chordate body plan: New insights from phylogenetic analyses of deuterostome phyla. Proceedings of the National Academy of Sciences (U.S.A.). 97, 4469-4474.
1997
Jeffery, W. R., & Swalla B. J. (1997).  Tunicates. Embryology: Constructing the Organism. 331-364. Sunderland, Massachusetts (U.S.A.): Sinauer Associates.